Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs78031903 chr7:57843151 G/A 1.68E-5 368 23.37 20.3 11.92 KM Plot
CRC rs7808820 chr7:57826778 C/T 1.71E-6 369 23.3 20.58 11.92 KM Plot
CRC rs7810759 chr7:61992372 T/A 7.47E-7 360 22.53 20.3 11.27 KM Plot
CRC rs7811078 chr7:62012221 C/T 6.62E-7 369 23.6 20.27 11.27 KM Plot
CRC rs7811389 chr7:57752641 G/T 1.51E-5 373 12.6 20.27 23.83 KM Plot
CRC rs78167851 chr5:56156455 G/A 5.15E-8 372 22.38 20.3 5.2 KM Plot
CRC rs78290521 chr3:105824948 G/A 2.54E-10 371 22.4 19.93 4.87 KM Plot
CRC rs78684814 chr6:53527508 T/C 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs79279936 chr6:53529471 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs79359022 chr6:53527019 T/C 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs79390908 chr15:67130924 C/T 5.25E-5 368 23.88 18.53 15.25 KM Plot
CRC rs79431838 chr6:53526721 G/A 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs79432068 chr7:62131948 C/T 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs79691308 chr5:40849661 CTGT/C 3.01E-5 368 22.38 21.37 26.1 KM Plot
CRC rs7975063 chr12:107301005 T/A 1.62E-6 363 24.07 19.6 10.9 KM Plot